Cpa Sim Analyzer



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Consensus directStong consensus direct[Ψ]-[K]-[x]-[α]Ψ = I,L, or V; α = D or EMelchior, 2000
Rodriguez, 2001
Consensus directΨ = A,F,I,L,M,P,V or W; α = D or E
Weak consensus directΨ = A,F,G,I,L,M,P,V,W or Y; α = D or E
PDSM[Ψ]-[K]-[x]-[α]-[x]2-[S]-[P]Ψ = A,F,I,L,M,P,V or W; α = D or EHietakangas, 2006
Extended PDSM[Ψ]-[K]-[x]-[α]-[x]2-[S/T]-[P](0-1)Ψ = A,F,I,L,M,P,V or W; α = D or E
NDSM[Ψ]-[K]-[x]-[α]-[x]-[α]6Ψ = A,F,I,L,M,P,V or W; 2 out of 6 α must be D or EYang, 2006
HCSM[Ψ]3-[K]-[x]-[E]Ψ = A,F,G,I,L,P or VMatic, 2010
SC-SUMO[P/G]-[x](0-3)-[I/V]-[K]-[x]-[E]-[x](0-3)-[P/G]Benson, 2007
Minimal SC-SUMO[I/V]-[K]-[x]-[E]-[x](0-3)-[P]Subramanian, 2003
SUMO-Acetyl switch[Ψ]-[K]-[x]-[α]-[P]Ψ = A,F,I,L,M,P,V or W; α = D or EStankovic-Valentin, 2007
pSuM[Ψ]-[K]-[x]-[pS]-[P]Ψ = A,F,I,L,M,P,V or W
pS/T = phosphorylated serine/threonine
Picard, 2012
Extended pSuM[Ψ]-[K]-[x]-[pS]-[P]-[pS/T](0-1)-[x]3-[pS/T](0-1)-[P]
Consensus InvertedStrong consensus inverted[α]-[x]-[K]-[Ψ]Ψ = I,L or V; α = D or EIvanov, 2007
Matic, 2010
Consensus invertedΨ = A,F,I,L,M,P,V or W; α = D or E
Weak consensus invertedΨ = A,F,G,I,L,M,P,V,W or Y; α = D or E
Putative SIM sitesSIM Type 1[Ψ]-[Ψ]-[x]-[Ψ]Ψ = I, L, V; α = D or EBeauclair, Submitted
SIM Type 2[Ψ]-[x]-[Ψ]-[Ψ]
SIM Type 3[Ψ]-[Ψ]-[Ψ]-[Ψ]
SIM Type 4[x]-[Ψ]-[Ψ]-[Ψ]
SIM Type 5[Ψ]-[α]-[Ψ]-[α]-[Ψ]
SIM Type α[V/I]-[x]-[V/I]-[V/I]Song, 2004
SIM Type β[V/I]-[V/I]-[x]-[V/I/L]
SIM Type a[P/I/L/V/M]-[I/L/V/M]-[x]-[I/L/V/M]-[α/S]3α = D or EMiteva, 2010
Sun, 2012
SIM Type b[P/I/L/V/M/F/Y]-[I/L/V/M]-[D]-[L]-[T]
SIM Type r[α/S]3-[I/L/V/M]-[x]-[I/L/V/M/F]2
SIM Type H[K]-[x]3-5-[I/V]-[I/L]-[I/L]-[x]3-[D/E/Q/N]-[α]2α = D or EHannich, 2005
SIM Type M[Ψ]2-[x]-[S]-[x]-[S/T]-[α]3Ψ = hydrobobic amino acid; α = acidic amino acidMinty, 2000
Special environmentSerine or Acid amino acid (For SIM)[S/D/E]Hecker, 2006
Potentially phosphorylated amino acid[S/T/Y]
Acid amino acid[D/E]
Hydrophobic and/or nonpolar amino acid[A/F/I/L/M/P/V/W]
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